I use MRS every day between my Premiere & Elite (both with updated software) and have not run into this problem. In fact even HDUI "Stop & Delete" option which didn't always work properly before now seems to work reliably every time for remote unit show delete.
Roamio Pro, Elite, Premiere
Cox - Motorola CableCards & TAs
Slingbox 350 via TiVo Mini & TiVo Stream for remote viewing
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